Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GREB1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
GREB1_ChIP
cell line
MCF7
library id
JC424
antibody
GREB1; ab72999 (abcam) Lot-(ab12563)
treatment
MCF7 cells in Complete DMEM media (rep1)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
37265340
Reads aligned (%)
86.3
Duplicates removed (%)
12.2
Number of peaks
8475 (qval < 1E-05)

hg38

Number of total reads
37265340
Reads aligned (%)
88.0
Duplicates removed (%)
11.1
Number of peaks
8249 (qval < 1E-05)

Base call quality data from DBCLS SRA