SRX194568
GSM1019124: INPUT; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
INPUT
cell line
MCF7
library id
JC379
antibody
none
treatment
Input

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
28226691
Reads aligned (%)
99.5
Duplicates removed (%)
1.9
Number of peaks
284 (qval < 1E-05)

hg19

Number of total reads
28226691
Reads aligned (%)
98.8
Duplicates removed (%)
3.1
Number of peaks
816 (qval < 1E-05)

Base call quality data from DBCLS SRA