Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
E2F4

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
E2F4_TAM_ChIP
cell line
MCF7
library id
JC347
antibody
E2F4; sc-866 (santa cruz) Lot-(A2804)
treatment
MCF7 cells in complete DMEM media treated with 100nm Tamoxifen for 48hrs

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg38

Number of total reads
24993936
Reads aligned (%)
98.1
Duplicates removed (%)
25.4
Number of peaks
3851 (qval < 1E-05)

hg19

Number of total reads
24993936
Reads aligned (%)
97.2
Duplicates removed (%)
27.4
Number of peaks
4039 (qval < 1E-05)

Base call quality data from DBCLS SRA