SRX194192
GSM1018960: 293T40Tet3; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TET3

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
Human embryonic kidney cells, pull-down of GST-tagged TET3 CXXC domain protein
cell line
HEK293T
cell type
embryonic kidney cells
pull-down
GST-tagged TET3 CXXC domain protein

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
12335647
Reads aligned (%)
27.4
Duplicates removed (%)
2.0
Number of peaks
1275 (qval < 1E-05)

hg19

Number of total reads
12335647
Reads aligned (%)
27.2
Duplicates removed (%)
2.4
Number of peaks
1252 (qval < 1E-05)

Base call quality data from DBCLS SRA