Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Lmo2

Cell type

Cell type Class
Blood
Cell type
Lymphoid-primed multipotent progenitors
NA
NA

Attributes by original data submitter

Sample

source_name
Multipotent haematopoietic progenitor, Lmo2 ChIP
cell line
Hoxb8-FL
cell type
LMPP-like
chip antibody
Lmo2 (R&D Systems, cat no. AF2726, lot VHX0110111)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
HoxB8 cells were fixed with either 1% or 0.4% formaldehyde for 10 mins. Chromatin was isolated, sonicated for 7 mins (30 sec on, 30 sec off), and specific antibodies were used to pull down the transcription factors of interest after a pre-clearing step. Chromatin was washed, de-crosslinked, amplified, size selected by gel purification and sequenced. As described in Wilson et al., Cell Stem Cell. 2010 Oct 8;7(4):532-44 (PMID 20887958). Library construction: According to Illumina TruSeq DNA Sample Prep Kit.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
43296649
Reads aligned (%)
86.8
Duplicates removed (%)
21.9
Number of peaks
34084 (qval < 1E-05)

mm9

Number of total reads
43296649
Reads aligned (%)
86.6
Duplicates removed (%)
22.0
Number of peaks
34095 (qval < 1E-05)

Base call quality data from DBCLS SRA