Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Digestive tract
Cell type
Intestinal villus
NA
NA

Attributes by original data submitter

Sample

source_name
intestinal villus cells
background strain
C57BL/6
tissue
proximal intestinal epithelium
cell type
differentiated villus cells
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

mm10

Number of total reads
54614373
Reads aligned (%)
94.5
Duplicates removed (%)
13.0
Number of peaks
412 (qval < 1E-05)

mm9

Number of total reads
54614373
Reads aligned (%)
94.3
Duplicates removed (%)
13.0
Number of peaks
442 (qval < 1E-05)

Base call quality data from DBCLS SRA