Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Blood

Cell type

CD4+

NA

NA

Sample

source_name

CD4+_Naive_Wb11970640

biomaterial_provider

John Stamatoyannopoulos

lab

UW

lab description

Stamatoyannopoulous - University of Washington

datatype

DnaseDgf

datatype description

DNase Digital Footprinting

cell

CD4+_Naive_Wb11970640

cell organism

human

cell description

CD4+ naive sorted cells, donor is Caucasian, male 26 year old, primary pheresis of single normal subject

cell karyotype

normal

cell lineage

mesoderm

cell sex

M

treatment

None

treatment description

No special treatment or protocol applies

labexpid

DS14108

labversion

Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75

Sequenced DNA Library

library_name

GSM1014537: UW_DnaseDgf_CD4+_Naive_Wb11970640

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

324550776

Reads aligned (%)

78.0

Duplicates removed (%)

39.9

Number of peaks

69471 (qval < 1E-05)

hg19

Number of total reads

324550776

Reads aligned (%)

77.3

Duplicates removed (%)

41.2

Number of peaks

69546 (qval < 1E-05)