SRX193606
GSM1014534: UW DnaseDgf HGF

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Others
Cell type
HGF
Tissue
gingiva
Description
gingival fibroblasts

Attributes by original data submitter

Sample

source_name
HGF
biomaterial_provider
ScienCell
lab
UW
lab description
Stamatoyannopoulous - University of Washington
datatype
DnaseDgf
datatype description
DNase Digital Footprinting
cell
HGF
cell organism
human
cell description
gingival fibroblasts
cell karyotype
normal
cell sex
U
labexpid
DS11752
labversion
Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75

Sequenced DNA Library

library_name
GSM1014534: UW_DnaseDgf_HGF
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
260649510
Reads aligned (%)
88.4
Duplicates removed (%)
37.3
Number of peaks
154460 (qval < 1E-05)

hg19

Number of total reads
260649510
Reads aligned (%)
87.7
Duplicates removed (%)
38.6
Number of peaks
153655 (qval < 1E-05)

Base call quality data from DBCLS SRA