Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Blood
Cell type
CD20+ B cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD20+_RO01778
biomaterial_provider
Rajinder Kaul, UW
lab
UW
lab description
Stamatoyannopoulous - University of Washington
datatype
DnaseDgf
datatype description
DNase Digital Footprinting
cell
CD20+_RO01778
cell organism
human
cell description
B cells, caucasian, draw number 1, newly promoted to tier 2: not in 2011 analysis
cell karyotype
normal
cell lineage
mesoderm
cell sex
F
labexpid
DS18208
labversion
Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75

Sequenced DNA Library

library_name
GSM1014525: UW_DnaseDgf_CD20+_RO01778
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
338977054
Reads aligned (%)
46.4
Duplicates removed (%)
49.2
Number of peaks
85110 (qval < 1E-05)

hg38

Number of total reads
338977054
Reads aligned (%)
47.7
Duplicates removed (%)
48.1
Number of peaks
85883 (qval < 1E-05)

Base call quality data from DBCLS SRA