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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: DNase-Seq
wikigenes
PDBj
CellType: CD20+ B cells
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX193597
GSM1014525: UW DnaseDgf CD20+ RO01778
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
DNase-seq
Antigen
DNase-Seq
Cell type
Cell type Class
Blood
Cell type
CD20+ B cells
NA
NA
Attributes by original data submitter
Sample
source_name
CD20+_RO01778
biomaterial_provider
Rajinder Kaul, UW
lab
UW
lab description
Stamatoyannopoulous - University of Washington
datatype
DnaseDgf
datatype description
DNase Digital Footprinting
cell
CD20+_RO01778
cell organism
human
cell description
B cells, caucasian, draw number 1, newly promoted to tier 2: not in 2011 analysis
cell karyotype
normal
cell lineage
mesoderm
cell sex
F
labexpid
DS18208
labversion
Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
Sequenced DNA Library
library_name
GSM1014525: UW_DnaseDgf_CD20+_RO01778
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
338977054
Reads aligned (%)
91.9
Duplicates removed (%)
48.1
Number of peaks
85883 (qval < 1E-05)
hg19
Number of total reads
338977054
Reads aligned (%)
91.4
Duplicates removed (%)
49.2
Number of peaks
85110 (qval < 1E-05)
Base call quality data from
DBCLS SRA