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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: DNase-Seq
wikigenes
PDBj
CellType: Treg
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX193595
GSM1014523: UW DnaseDgf Treg Wb78495824
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
DNase-seq
Antigen
DNase-Seq
Cell type
Cell type Class
Blood
Cell type
Treg
NA
NA
Attributes by original data submitter
Sample
source_name
Treg_Wb78495824
biomaterial_provider
John Stamatoyannopoulos
lab
UW
lab description
Stamatoyannopoulous - University of Washington
datatype
DnaseDgf
datatype description
DNase Digital Footprinting
cell
Treg_Wb78495824
cell organism
human
cell description
T regulatory cells in vivo isolation
cell karyotype
normal donor is Causasian, female 35 year old, primary pheresis of single normal subject
cell lineage
mesoderm
cell sex
F
treatment
None
treatment description
No special treatment or protocol applies
labexpid
DS14702
labversion
Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
Sequenced DNA Library
library_name
GSM1014523: UW_DnaseDgf_Treg_Wb78495824
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
211242534
Reads aligned (%)
84.7
Duplicates removed (%)
43.6
Number of peaks
100203 (qval < 1E-05)
hg19
Number of total reads
211242534
Reads aligned (%)
84.0
Duplicates removed (%)
45.1
Number of peaks
99670 (qval < 1E-05)
Base call quality data from
DBCLS SRA