Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Blood

Cell type

Treg

NA

NA

Sample

source_name

Treg_Wb78495824

biomaterial_provider

John Stamatoyannopoulos

lab

UW

lab description

Stamatoyannopoulous - University of Washington

datatype

DnaseDgf

datatype description

DNase Digital Footprinting

cell

Treg_Wb78495824

cell organism

human

cell description

T regulatory cells in vivo isolation

cell karyotype

normal donor is Causasian, female 35 year old, primary pheresis of single normal subject

cell lineage

mesoderm

cell sex

F

treatment

None

treatment description

No special treatment or protocol applies

labexpid

DS14702

labversion

Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75

Sequenced DNA Library

library_name

GSM1014523: UW_DnaseDgf_Treg_Wb78495824

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

211242534

Reads aligned (%)

84.7

Duplicates removed (%)

43.6

Number of peaks

100203 (qval < 1E-05)

hg19

Number of total reads

211242534

Reads aligned (%)

84.0

Duplicates removed (%)

45.1

Number of peaks

99670 (qval < 1E-05)