Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Blood

Cell type

Th2 Cells

MeSH Description

A subset of helper-inducer T-lymphocytes which synthesize and secrete the INTERLEUKINS IL-4; IL-5; IL-6; and IL-10. These cytokines influence B-cell development and antibody production as well as augmenting humoral responses.

Sample

source_name

Th2

biomaterial_provider

Stam lab

lab

UW

lab description

Stamatoyannopoulous - University of Washington

datatype

DnaseDgf

datatype description

DNase Digital Footprinting

cell

Th2

cell organism

human

cell description

primary Th2 T cells

cell lineage

mesoderm

cell sex

U

treatment

None

treatment description

No special treatment or protocol applies

labexpid

DS17603

labversion

Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75

Sequenced DNA Library

library_name

GSM1014521: UW_DnaseDgf_Th2

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

299998962

Reads aligned (%)

94.2

Duplicates removed (%)

36.0

Number of peaks

84600 (qval < 1E-05)

hg19

Number of total reads

299998962

Reads aligned (%)

93.4

Duplicates removed (%)

38.1

Number of peaks

84136 (qval < 1E-05)