SRX193592
GSM1014520: UW DnaseDgf HIPEpiC

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Others
Cell type
HIPEpiC
Tissue
epithelium
Lineage
ectoderm
Description
iris pigment epithelial cells

Attributes by original data submitter

Sample

source_name
HIPEpiC
biomaterial_provider
ScienCell
lab
UW
lab description
Stamatoyannopoulous - University of Washington
datatype
DnaseDgf
datatype description
DNase Digital Footprinting
cell
HIPEpiC
cell organism
human
cell description
iris pigment epithelial cells
cell karyotype
normal
cell lineage
ectoderm
cell sex
U
labexpid
DS12684
labversion
Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75

Sequenced DNA Library

library_name
GSM1014520: UW_DnaseDgf_HIPEpiC
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
360017644
Reads aligned (%)
88.6
Duplicates removed (%)
53.8
Number of peaks
263485 (qval < 1E-05)

hg19

Number of total reads
360017644
Reads aligned (%)
88.2
Duplicates removed (%)
54.8
Number of peaks
262360 (qval < 1E-05)

Base call quality data from DBCLS SRA