Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

source_name
input DNA
tissue
Liver
strain
C57BL/6
age
8 weeks
gender
male
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

mm10

Number of total reads
18679583
Reads aligned (%)
90.8
Duplicates removed (%)
18.1
Number of peaks
492 (qval < 1E-05)

mm9

Number of total reads
18679583
Reads aligned (%)
90.6
Duplicates removed (%)
18.2
Number of peaks
562 (qval < 1E-05)

Base call quality data from DBCLS SRA