SRX193430
GSM1018052: tgf and sorafenib H3K4me3; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Lung
Cell type
A549
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
lung adenocarcinoma cells:A549, the histone was h3k4me3,treated by tgf-beta+sorafenib
cell line
A549
treatment
TGFbeta and Sorafenib
chip antibody
H3K4me3
chip antibody manufacturer
Millipore

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
31486401
Reads aligned (%)
95.2
Duplicates removed (%)
24.9
Number of peaks
42817 (qval < 1E-05)

hg19

Number of total reads
31486401
Reads aligned (%)
94.7
Duplicates removed (%)
25.2
Number of peaks
42799 (qval < 1E-05)

Base call quality data from DBCLS SRA