SRX193386
GSM1017849: PR-R30 ChIPSeq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PGR

Cell type

Cell type Class
Breast
Cell type
T-47D
Primary Tissue
Breast
Tissue Diagnosis
Adenocarcinoma Ductal

Attributes by original data submitter

Sample

source_name
T47D-MTVL breast cancer cell line
treatment
R5020 30 minutes
chip antibody
anti-PR (H190, Santa Cruz, #sc 7208, D2705 lot)
cell line
T47D-MTVL

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
7546307
Reads aligned (%)
1.8
Duplicates removed (%)
63.9
Number of peaks
0 (qval < 1E-05)

hg19

Number of total reads
7546307
Reads aligned (%)
1.8
Duplicates removed (%)
71.2
Number of peaks
0 (qval < 1E-05)

Base call quality data from DBCLS SRA