SRX193357
GSM1017635: Input for H3K9me2; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryonic fibroblast
Cell type
3T3-L1
Tissue
Embryo
Cell Type
Fibroblast

Attributes by original data submitter

Sample

source_name
3T3-L1 preadipocytes
strain
mixed C57/BL6-129
cell type
3T3-L1 preadipocytes
antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
170186722
Reads aligned (%)
91.4
Duplicates removed (%)
13.2
Number of peaks
896 (qval < 1E-05)

mm9

Number of total reads
170186722
Reads aligned (%)
91.2
Duplicates removed (%)
13.1
Number of peaks
1118 (qval < 1E-05)

Base call quality data from DBCLS SRA