SRX193356
GSM1017634: Input for H3K4me3 and H3K27me3; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryonic fibroblast
Cell type
3T3-L1
Tissue
Embryo
Cell Type
Fibroblast

Attributes by original data submitter

Sample

source_name
3T3-L1 preadipocytes
strain
mixed C57/BL6-129
cell type
3T3-L1 preadipocytes
antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
60541495
Reads aligned (%)
94.3
Duplicates removed (%)
24.5
Number of peaks
544 (qval < 1E-05)

mm9

Number of total reads
60541495
Reads aligned (%)
94.1
Duplicates removed (%)
24.4
Number of peaks
634 (qval < 1E-05)

Base call quality data from DBCLS SRA