Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Adult
Cell type
Intestines
NA
NA

Attributes by original data submitter

Sample

source_name
adult intestine, 3HA-Sc input
genotype/variation
3HA-sc transgene
tissue
intestine
age
adult
treatment
3 days at 29°C
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated with antibody according to ChIP-IT® High Sensitivity kit (Active Motif). Libraries were prepared for sequencing using NEBNext Ultra DNA Library Preparation Kit for Illumina.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

dm6

Number of total reads
9173277
Reads aligned (%)
94.1
Duplicates removed (%)
1.3
Number of peaks
464 (qval < 1E-05)

dm3

Number of total reads
9173277
Reads aligned (%)
94.3
Duplicates removed (%)
1.2
Number of peaks
0 (qval < 1E-05)

Base call quality data from DBCLS SRA