SRX1923324
GSM2229486: ChIP-seq BRD3 Mutu Replicate1; Homo sapiens; Human gammaherpesvirus 4; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BRD3

Cell type

Cell type Class
Blood
Cell type
Mutu
NA
NA

Attributes by original data submitter

Sample

source_name
MutuI (EBV+ Burkitt lymphoma cell line)
cell line
MutuI
pathogen
Epstein-Barr virus
chip antibody
BRD3

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was prepared and ChIP performed as described in the paper ChIP-seq libraries were prepared as described in the paper

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
37797896
Reads aligned (%)
68.5
Duplicates removed (%)
27.2
Number of peaks
1416 (qval < 1E-05)

hg38

Number of total reads
37797896
Reads aligned (%)
70.7
Duplicates removed (%)
25.9
Number of peaks
1066 (qval < 1E-05)

Base call quality data from DBCLS SRA