Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

source_name
whole liver extract
age
29-32 days
chip antibody
INPUT
treament
vehicle
tissue
liver
animal id
10
experiment id
C
strain
B6C3F1/Crl (C57BL/6 male x C3H/He female)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

mm10

Number of total reads
28874920
Reads aligned (%)
85.5
Duplicates removed (%)
4.9
Number of peaks
220 (qval < 1E-05)

mm9

Number of total reads
28874920
Reads aligned (%)
85.4
Duplicates removed (%)
5.0
Number of peaks
181 (qval < 1E-05)

Base call quality data from DBCLS SRA