SRX192097
GSM1015789: Input G1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Placenta
Cell type
Trophoblast stem cells
NA
NA

Attributes by original data submitter

Sample

source_name
TS cells_Input G1
strain
CD1(ICR)
developmental stage
blastocysts
cell type
trophoblast stem (TS) cells
cell cycle stage
G1
molecule subtype
Input DNA

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
17377440
Reads aligned (%)
98.1
Duplicates removed (%)
9.4
Number of peaks
166 (qval < 1E-05)

mm9

Number of total reads
17377440
Reads aligned (%)
98.0
Duplicates removed (%)
9.5
Number of peaks
131 (qval < 1E-05)

Base call quality data from DBCLS SRA