Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Cell line
Cell type
S2
Source
Oregon R
Developmental Stage
late embryonic stage

Attributes by original data submitter

Sample

source_name
S2 cells
chip antibody
dCTCF antibody 68 (rat)
cell line
S2 DRSC: Schneider's line 2
treatment
3AB treated

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

dm3

Number of total reads
19432784
Reads aligned (%)
88.5
Duplicates removed (%)
71.2
Number of peaks
5850 (qval < 1E-05)

dm6

Number of total reads
19432784
Reads aligned (%)
88.3
Duplicates removed (%)
73.1
Number of peaks
4890 (qval < 1E-05)

Base call quality data from DBCLS SRA