Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Control mouse ES cells
chip antibody
IgG
strain
inbred 129
cell line
E14
cell type
embryonbic stem cells
genotype
Control

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
77785136
Reads aligned (%)
86.1
Duplicates removed (%)
22.6
Number of peaks
213 (qval < 1E-05)

mm9

Number of total reads
77785136
Reads aligned (%)
85.8
Duplicates removed (%)
22.4
Number of peaks
223 (qval < 1E-05)

Base call quality data from DBCLS SRA