Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Kidney
Cell type
Kidney
MeSH Description
Body organ that filters blood for the secretion of URINE and that regulates ion concentrations.

Attributes by original data submitter

Sample

source_name
Kidney
biomaterial_provider
1)Stam lab ; 2)CSHL lab
lab
UW-m
lab description
Stamatoyannopoulous - University of Washington
datatype
DnaseSeq
datatype description
DNaseI HS Sequencing
cell
Kidney
cell organism
mouse
cell description
Kidney
cell sex
M
age
adult-8wks
age description
Adult 8 weeks
strain
C57BL/6
strain description
C57 black 6, the most common inbred strain of laboratory mouse
age
adult-8wks
age description
Adult 8 weeks
labversion
1,Hotspot-v5.1,lmax-v1.0,lmax-v1.1,WindowDensity-bin20-win+/-75
replicate
1,2
strain description
C57 black 6, the most common inbred strain of laboratory mouse

Sequenced DNA Library

library_name
GSM1014193: UW_DnaseSeq_Kidney_adult-8wks_C57BL/6
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer

mm10

Number of total reads
88601458
Reads aligned (%)
97.3
Duplicates removed (%)
22.5
Number of peaks
102265 (qval < 1E-05)

mm9

Number of total reads
88601458
Reads aligned (%)
97.1
Duplicates removed (%)
22.5
Number of peaks
102302 (qval < 1E-05)

Base call quality data from DBCLS SRA