Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Blood

Cell type

Naive T cells

NA

NA

Sample

source_name

T-Naive

biomaterial_provider

Stam lab

lab

UW-m

lab description

Stamatoyannopoulous - University of Washington

datatype

DnaseSeq

datatype description

DNaseI HS Sequencing

cell

T-Naive

cell organism

mouse

cell description

Naive T cells: CD4+, CD25-

cell sex

M

age

adult-8wks

age description

Adult 8 weeks

strain

C57BL/6

strain description

C57 black 6, the most common inbred strain of laboratory mouse

age

adult-8wks

age description

Adult 8 weeks

labexpid

DS17082,DS17080

labversion

Hotspot-v5.2,Hotspot-v5.1,1,lmax-v1.1,lmax-v1.0,WindowDensity-bin20-win+/-75

replicate

1,3,2,4

strain description

C57 black 6, the most common inbred strain of laboratory mouse

Sequenced DNA Library

library_name

GSM1014192: UW_DnaseSeq_T-Naive_adult-8wks_C57BL/6

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina Genome Analyzer

mm10

Number of total reads

149563125

Reads aligned (%)

95.3

Duplicates removed (%)

31.2

Number of peaks

54610 (qval < 1E-05)

mm9

Number of total reads

149563125

Reads aligned (%)

95.2

Duplicates removed (%)

31.2

Number of peaks

54658 (qval < 1E-05)