SRX191032
GSM1014174: UW DnaseSeq ForelimbBud E11.5 CD-1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Embryo
Cell type
Forelimb
MeSH Description
A front limb of a quadruped. (The Random House College Dictionary, 1980)

Attributes by original data submitter

Sample

source_name
ForelimbBud
biomaterial_provider
Selleri lab, Cornell
lab
UW-m
lab description
Stamatoyannopoulous - University of Washington
datatype
DnaseSeq
datatype description
DNaseI HS Sequencing
cell
ForelimbBud
cell organism
mouse
cell description
embryo forelimb buds
cell sex
M
age
E11.5
age description
Embryonic day 11.5
strain
CD-1
strain description
Multipurpose mouse used for safety testing, aging studies, surgical models and pseudopregnancy.
age
E11.5
age description
Embryonic day 11.5
labversion
1,Hotspot-v5.2,lmax-v1.1,WindowDensity-bin20-win+/-75
replicate
1,2
strain description
Multipurpose mouse used for safety testing, aging studies, surgical models and pseudopregnancy.

Sequenced DNA Library

library_name
GSM1014174: UW_DnaseSeq_ForelimbBud_E11.5_CD-1
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
170397385
Reads aligned (%)
94.5
Duplicates removed (%)
24.2
Number of peaks
87830 (qval < 1E-05)

mm9

Number of total reads
170397385
Reads aligned (%)
94.3
Duplicates removed (%)
24.1
Number of peaks
88034 (qval < 1E-05)

Base call quality data from DBCLS SRA