Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Blood

Cell type

CH12

Tissue

Blood

Lineage

cellLine

Description

B-cell lymphoma (GM12878 analog)

Sample

source_name

CH12

biomaterial_provider

Weissman lab

lab

UW-m

lab description

Stamatoyannopoulous - University of Washington

datatype

DnaseSeq

datatype description

DNaseI HS Sequencing

line

CH12

cell organism

mouse

cell description

B-cell lymphoma (GM12878 analog)

cell sex

F

age

immortalized

biomaterial_type

immortalized cell line

strain

B10.H-2aH-4bp/Wts

strain description

Derived by inbreeding from selected F2 progeny of B10.A X B10.129

age

immortalized

biomaterial_type

immortalized cell line

labexpid

DS22536,DS22542

labversion

1,Hotspot-v5.2,lmax-v1.1,WindowDensity-bin20-win+/-75

replicate

1,2

strain description

Derived by inbreeding from selected F2 progeny of B10.A X B10.129

Sequenced DNA Library

library_name

GSM1014153: UW_DnaseSeq_CH12_immortalized_B10.H-2aH-4bp/Wts

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina Genome Analyzer

mm10

Number of total reads

153338487

Reads aligned (%)

79.6

Duplicates removed (%)

30.7

Number of peaks

119120 (qval < 1E-05)

mm9

Number of total reads

153338487

Reads aligned (%)

79.4

Duplicates removed (%)

30.7

Number of peaks

119203 (qval < 1E-05)