Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Digestive tract
Cell type
Intestine, Small
MeSH Description
The portion of the GASTROINTESTINAL TRACT between the PYLORUS of the STOMACH and the ILEOCECAL VALVE of the LARGE INTESTINE. It is divisible into three portions: the DUODENUM, the JEJUNUM, and the ILEUM.

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
Shin Lin, Stanford University
BIOMATERIAL_TYPE
Primary Tissue
TISSUE_TYPE
Small Intestine
TISSUE_DEPOT
N/A
COLLECTION_METHOD
Autopsy
DONOR_ID
STL001
DONOR_AGE
3
DONOR_HEALTH_STATUS
healthy, no prior medical history (NO diabetes, hypertension, coronary artery disease, cancer)
DONOR_SEX
male
DONOR_ETHNICITY
Caucasian and African American
sample_term_id
UBERON_0002108

Sequenced DNA Library

library_name
AK330
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
30978537
Reads aligned (%)
94.3
Duplicates removed (%)
49.6
Number of peaks
2649 (qval < 1E-05)

hg19

Number of total reads
30978537
Reads aligned (%)
91.4
Duplicates removed (%)
55.7
Number of peaks
1810 (qval < 1E-05)

Base call quality data from DBCLS SRA