SRX190406
GSM1011562: TFAP2C ChIP A375; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TFAP2C

Cell type

Cell type Class
Epidermis
Cell type
A-375
Primary Tissue
Skin
Tissue Diagnosis
Melanoma

Attributes by original data submitter

Sample

source_name
A375
cell type
pigmented melanoma
cell line
A375
antibody
TFAP2C monoclonal antibody SC-12762X (Santa Cruz Biotechnology, Santa Cruz, CA)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
21698161
Reads aligned (%)
96.3
Duplicates removed (%)
7.3
Number of peaks
50418 (qval < 1E-05)

hg19

Number of total reads
21698161
Reads aligned (%)
95.9
Duplicates removed (%)
7.7
Number of peaks
50339 (qval < 1E-05)

Base call quality data from DBCLS SRA