Antigen

Antigen Class

TFs and others

Antigen

SIN3A

Cell type

Cell type Class

Digestive tract

Cell type

HCT 116

Primary Tissue

Colon

Tissue Diagnosis

Carcinoma

Sample

GEO Accession

GSM1010905

antibody antibodydescription

Rabbit polyclonal, Sin3A (k-20). Antibody Target: SIN3AK20

antibody targetdescription

Co-repressor interacting with HDAC1, N-coR, SMRT, and MeCP2

antibody vendorid

sc-994

antibody vendorname

Santa Cruz Biotechnology

antibody

Sin3Ak-20

cell description

colorectal carcinoma (PMID: 7214343)

cell karyotype

cancer

cell lineage

endoderm

cell organism

human

cell sex

M

cell

HCT-116

controlid

SL12247,SL12246

datatype description

Chromatin IP Sequencing

datatype

ChipSeq

lab description

Myers - Hudson Alpha Institute for Biotechnology

lab

HudsonAlpha

labexpid

SL13076,SL12244

protocol description

Faster ChIP protocol & AMpure XP size selection for ChIP-seq (Myers)

protocol

v042211.1

replicate

1,2

softwareversion

MACS

treatment description

No special treatment or protocol applies

treatment

None

Sequenced DNA Library

library_name

GSM1010905: HudsonAlpha_ChipSeq_HCT-116_Sin3Ak-20_v042211.1

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg19

Number of total reads

56513554

Reads aligned (%)

86.7

Duplicates removed (%)

6.5

Number of peaks

39384 (qval < 1E-05)

hg38

Number of total reads

56513554

Reads aligned (%)

87.5

Duplicates removed (%)

6.0

Number of peaks

39341 (qval < 1E-05)