Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

GEO Accession
GSM1010894
antibody
RevXlinkChromatin
cell description
leukemia, "The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC
cell karyotype
cancer
cell lineage
mesoderm
cell organism
human
cell sex
F
cell
K562
controlid
SL12793,SL6023,SL11659,SL9103
datatype description
Chromatin IP Sequencing
datatype
ChipSeq
lab description
Myers - Hudson Alpha Institute for Biotechnology
lab
HudsonAlpha
labexpid
SL12793,SL6023,SL11659,SL9103
protocol description
Faster ChIP protocol & AMpure XP size selection for ChIP-seq (Myers)
protocol
v042211.1
replicate
1,3,2,4
treatment description
No special treatment or protocol applies
treatment
None

Sequenced DNA Library

library_name
GSM1010894: HudsonAlpha_ChipSeq_K562_RevXlinkChromatin_v042211.1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
176829940
Reads aligned (%)
87.2
Duplicates removed (%)
5.9
Number of peaks
1436 (qval < 1E-05)

hg19

Number of total reads
176829940
Reads aligned (%)
86.3
Duplicates removed (%)
6.4
Number of peaks
1848 (qval < 1E-05)

Base call quality data from DBCLS SRA