Antigen

Antigen Class

TFs and others

Antigen

MEF2A

Cell type

Cell type Class

Neural

Cell type

SK-N-SH

Primary Tissue

Brain

Tissue Diagnosis

Neuroblastoma

Sample

GEO Accession

GSM1010834

antibody antibodydescription

Rabbit polyclonal IgG, epitope mapping at the C-terminus of MEF-2 of human origin. Antibody Target: MEF2A

antibody targetdescription

The protein encoded by this gene is a DNA-binding transcription factor that activates many muscme-specific, growth factor-induced, and stress-induced genes.

antibody vendorid

sc-313

antibody vendorname

Santa Cruz Biotechnology

antibody

MEF2A

cell description

neuroblastoma, newly promoted to tier 2: not in 2011 analysis, the SK-N-SH line was established from a neuroblastoma in a 4 year old individual.

cell karyotype

cancer

cell lineage

ectoderm

cell organism

human

cell sex

F

cell

SK-N-SH

controlid

SL16761,SL13505

datatype description

Chromatin IP Sequencing

datatype

ChipSeq

lab description

Myers - Hudson Alpha Institute for Biotechnology

lab

HudsonAlpha

labexpid

SL13493,SL14704

protocol description

Faster ChIP protocol & AMpure XP size selection for ChIP-seq (Myers)

protocol

v042211.1

replicate

1,2

softwareversion

MACS

treatment description

No special treatment or protocol applies

treatment

None

Sequenced DNA Library

library_name

GSM1010834: HudsonAlpha_ChipSeq_SK-N-SH_MEF2A_v042211.1

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

50809038

Reads aligned (%)

90.2

Duplicates removed (%)

7.3

Number of peaks

12569 (qval < 1E-05)

hg19

Number of total reads

50809038

Reads aligned (%)

89.6

Duplicates removed (%)

8.6

Number of peaks

12597 (qval < 1E-05)