Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ZBTB7A

Cell type

Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

GEO Accession
GSM1010831
antibody antibodydescription
Goat polyclonal IgG, epitope mapping at the C-terminus of LRF of human origin. Antibody Target: ZBTB7A
antibody targetdescription
Plays a key role in the instruction of early lymphoid progenitors to develop into B lineage by repressing T-cell instructive Notch signals (By similarity).
antibody vendorid
sc-34508
antibody vendorname
Santa Cruz Biotechnology
antibody
ZBTB7A_(SC-34508)
cell description
hepatocellular carcinoma
cell karyotype
cancer
cell lineage
endoderm
cell organism
human
cell sex
M
cell
HepG2
controlid
SL3976
datatype description
Chromatin IP Sequencing
datatype
ChipSeq
lab description
Myers - Hudson Alpha Institute for Biotechnology
lab
HudsonAlpha
labexpid
SL6464,SL3973
protocol description
2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)
protocol
v041610.1
replicate
1,2
softwareversion
MACS
treatment description
No special treatment or protocol applies
treatment
None

Sequenced DNA Library

library_name
GSM1010831: HudsonAlpha_ChipSeq_HepG2_ZBTB7A_(SC-34508)_v041610.1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
67950079
Reads aligned (%)
49.4
Duplicates removed (%)
34.5
Number of peaks
12625 (qval < 1E-05)

hg38

Number of total reads
67950079
Reads aligned (%)
50.5
Duplicates removed (%)
33.5
Number of peaks
12820 (qval < 1E-05)

Base call quality data from DBCLS SRA