Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GABPA

Cell type

Cell type Class
Blood
Cell type
HL-60
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

GEO Accession
GSM1010822
antibody antibodydescription
Mouse monoclonal, GABPa(G-1), IgG1. Antibody Target: GABP
antibody targetdescription
The transcription factor GA-binding protein (GABP) is composed of two subunits, alpha and beta. Alpha binds to a specific DNA sequence.
antibody vendorid
sc-28312
antibody vendorname
Santa Cruz Biotechnology
antibody
GABP
cell description
promyelocytic leukemia cells, (PMID: 276884)
cell karyotype
cancer
cell lineage
mesoderm
cell organism
human
cell sex
F
cell
HL-60
controlid
SL12792
datatype description
Chromatin IP Sequencing
datatype
ChipSeq
lab description
Myers - Hudson Alpha Institute for Biotechnology
lab
HudsonAlpha
labexpid
SL16321,SL12633
protocol description
Faster ChIP protocol & AMpure XP size selection for ChIP-seq (Myers)
protocol
v042211.1
replicate
1,2
softwareversion
MACS
treatment description
No special treatment or protocol applies
treatment
None

Sequenced DNA Library

library_name
GSM1010822: HudsonAlpha_ChipSeq_HL-60_GABP_v042211.1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
50434475
Reads aligned (%)
81.9
Duplicates removed (%)
9.6
Number of peaks
11119 (qval < 1E-05)

hg38

Number of total reads
50434475
Reads aligned (%)
83.6
Duplicates removed (%)
8.4
Number of peaks
11043 (qval < 1E-05)

Base call quality data from DBCLS SRA