Antigen

Antigen Class

TFs and others

Antigen

GABPA

Cell type

Cell type Class

Blood

Cell type

HL-60

Primary Tissue

Blood

Tissue Diagnosis

Leukemia

Sample

GEO Accession

GSM1010822

antibody antibodydescription

Mouse monoclonal, GABPa(G-1), IgG1. Antibody Target: GABP

antibody targetdescription

The transcription factor GA-binding protein (GABP) is composed of two subunits, alpha and beta. Alpha binds to a specific DNA sequence.

antibody vendorid

sc-28312

antibody vendorname

Santa Cruz Biotechnology

antibody

GABP

cell description

promyelocytic leukemia cells, (PMID: 276884)

cell karyotype

cancer

cell lineage

mesoderm

cell organism

human

cell sex

F

cell

HL-60

controlid

SL12792

datatype description

Chromatin IP Sequencing

datatype

ChipSeq

lab description

Myers - Hudson Alpha Institute for Biotechnology

lab

HudsonAlpha

labexpid

SL16321,SL12633

protocol description

Faster ChIP protocol & AMpure XP size selection for ChIP-seq (Myers)

protocol

v042211.1

replicate

1,2

softwareversion

MACS

treatment description

No special treatment or protocol applies

treatment

None

Sequenced DNA Library

library_name

GSM1010822: HudsonAlpha_ChipSeq_HL-60_GABP_v042211.1

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

50434475

Reads aligned (%)

91.3

Duplicates removed (%)

8.4

Number of peaks

11043 (qval < 1E-05)

hg19

Number of total reads

50434475

Reads aligned (%)

90.7

Duplicates removed (%)

9.6

Number of peaks

11119 (qval < 1E-05)