Antigen

Antigen Class

TFs and others

Antigen

SIN3A

Cell type

Cell type Class

Neural

Cell type

SK-N-SH

Primary Tissue

Brain

Tissue Diagnosis

Neuroblastoma

Sample

GEO Accession

GSM1010816

antibody antibodydescription

Rabbit polyclonal, Sin3A (k-20). Antibody Target: SIN3AK20

antibody targetdescription

Co-repressor interacting with HDAC1, N-coR, SMRT, and MeCP2

antibody vendorid

sc-994

antibody vendorname

Santa Cruz Biotechnology

antibody

Sin3Ak-20

cell description

neuroblastoma, newly promoted to tier 2: not in 2011 analysis, the SK-N-SH line was established from a neuroblastoma in a 4 year old individual.

cell karyotype

cancer

cell lineage

ectoderm

cell organism

human

cell sex

F

cell

SK-N-SH

controlid

SL3774,SL3775

datatype description

Chromatin IP Sequencing

datatype

ChipSeq

lab description

Myers - Hudson Alpha Institute for Biotechnology

lab

HudsonAlpha

labexpid

SL5895,SL5043

protocol description

2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)

protocol

v041610.1

replicate

1,2

softwareversion

MACS

treatment description

No special treatment or protocol applies

treatment

None

Sequenced DNA Library

library_name

GSM1010816: HudsonAlpha_ChipSeq_SK-N-SH_Sin3Ak-20_v041610.1

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

77713691

Reads aligned (%)

80.5

Duplicates removed (%)

29.1

Number of peaks

22292 (qval < 1E-05)

hg19

Number of total reads

77713691

Reads aligned (%)

80.1

Duplicates removed (%)

30.0

Number of peaks

22190 (qval < 1E-05)