Antigen

Antigen Class

TFs and others

Antigen

RAD21

Cell type

Cell type Class

Uterus

Cell type

ECC-1

Primary Tissue

Uterus

Tissue Diagnosis

Adenocarcinoma

Sample

GEO Accession

GSM1010801

antibody antibodydescription

Rabbit polyclonal. Antibody Target: RAD21

antibody targetdescription

Synthetic peptide (Human) conjugated to KLH - which represents a portion of human Rad21 encoded within exon 14

antibody vendorid

ab992

antibody vendorname

abcam

antibody

Rad21

cell description

epithelial cell line derived from an endometrium adenocarcinoma, fetal membranes were collected from women who underwent planned cesarean delivery at term, before labor and without rupture of membranes

cell karyotype

cancer

cell lineage

endoderm

cell organism

human

cell sex

F

cell

ECC-1

controlid

SL16754,SL13506

datatype description

Chromatin IP Sequencing

datatype

ChipSeq

lab description

Myers - Hudson Alpha Institute for Biotechnology

lab

HudsonAlpha

labexpid

SL13270,SL16305

protocol description

Faster ChIP protocol & AMpure XP size selection for ChIP-seq (Myers)

protocol

v042211.1

replicate

1,2

softwareversion

MACS

treatment description

No special treatment or protocol applies

treatment

None

Sequenced DNA Library

library_name

GSM1010801: HudsonAlpha_ChipSeq_ECC-1_Rad21_v042211.1

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg19

Number of total reads

60905603

Reads aligned (%)

90.1

Duplicates removed (%)

11.4

Number of peaks

49968 (qval < 1E-05)

hg38

Number of total reads

60905603

Reads aligned (%)

90.5

Duplicates removed (%)

10.8

Number of peaks

50109 (qval < 1E-05)