Antigen

Antigen Class

TFs and others

Antigen

SP4

Cell type

Cell type Class

Pluripotent stem cell

Cell type

hESC H1

NA

NA

Sample

GEO Accession

GSM1010743

antibody antibodydescription

Rabbit polyclonal IgG, epitope mapping at the C-terminus of Sp4 of human origin. Antibody Target: SP4

antibody targetdescription

Binds to GT and GC boxes promoters elements. Probable transcriptional activator.

antibody vendorid

sc-645

antibody vendorname

Santa Cruz Biotechnology

antibody

SP4_(V-20)

cell description

embryonic stem cells

cell karyotype

normal

cell lineage

inner cell mass

cell organism

human

cell sex

M

cell

H1-hESC

controlid

SL6018

datatype description

Chromatin IP Sequencing

datatype

ChipSeq

lab description

Myers - Hudson Alpha Institute for Biotechnology

lab

HudsonAlpha

labexpid

SL7836,SL8135

protocol description

Faster ChIP protocol & AMpure XP size selection for ChIP-seq (Myers)

protocol

v042211.1

replicate

1,2

softwareversion

MACS

treatment description

No special treatment or protocol applies

treatment

None

Sequenced DNA Library

library_name

GSM1010743: HudsonAlpha_ChipSeq_H1-hESC_SP4_(V-20)_v042211.1

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

67023958

Reads aligned (%)

83.3

Duplicates removed (%)

8.6

Number of peaks

13047 (qval < 1E-05)

hg19

Number of total reads

67023958

Reads aligned (%)

82.9

Duplicates removed (%)

9.3

Number of peaks

12498 (qval < 1E-05)