ChIP-Atlas: SRX190192

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: Input control
Antigen: Input control

Cell type

Cell type Class: Cardiovascular
Cell type: HUVEC
Primary Tissue: Umbilical Cord
Tissue Diagnosis: Normal

Attributes by original data submitter

Sample

GEO Accession: GSM1010736
antibody: RevXlinkChromatin
cell description: umbilical vein endothelial cells
cell karyotype: normal
cell lineage: mesoderm
cell organism: human
cell sex: U
cell: HUVEC
controlid: SL1106
datatype description: Chromatin IP Sequencing
datatype: ChipSeq
lab description: Myers - Hudson Alpha Institute for Biotechnology
lab: HudsonAlpha
labexpid: SL1106
protocol description: one 15-cycle round of PCR (Myers)
protocol: PCR1x
replicate: 1
treatment description: No special treatment or protocol applies
treatment: None

Sequenced DNA Library

library_name: GSM1010736: HudsonAlpha_ChipSeq_HUVEC_RevXlinkChromatin_PCR1x
library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP
library_construction_protocol: Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs

Sequencing Platform

instrument_model: Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads: 20051373
Reads aligned (%): 86.4
Duplicates removed (%): 2.6
Number of peaks: 424 (qval < 1E-05)

hg19

Number of total reads: 20051373
Reads aligned (%): 85.9
Duplicates removed (%): 3.3
Number of peaks: 651 (qval < 1E-05)

Base call quality data from DBCLS SRA