Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MTA3

Cell type

Cell type Class
Blood
Cell type
GM12878
Tissue
blood
Lineage
mesoderm
Description
B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Attributes by original data submitter

Sample

GEO Accession
GSM1010729
antibody antibodydescription
Mouse monoclonal IgG, raised against a recombinant protein corresponding to a region near the N-terminus of MTA3 of human origin. Antibody Target: MTA3
antibody targetdescription
Plays a role in maintenance of the normal epithelial architecture through the repression of SNAI1 transcription in a histone deacetylase-dependent manner, and thus the regulation of E-cadherin levels.
antibody vendorid
sc-81325
antibody vendorname
Santa Cruz Biotechnology
antibody
MTA3_(SC-81325)
cell description
B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus
cell karyotype
normal
cell lineage
mesoderm
cell organism
human
cell sex
F
cell
GM12878
controlid
SL6022
datatype description
Chromatin IP Sequencing
datatype
ChipSeq
lab description
Myers - Hudson Alpha Institute for Biotechnology
lab
HudsonAlpha
labexpid
SL7899,SL8129
protocol description
Faster ChIP protocol & AMpure XP size selection for ChIP-seq (Myers)
protocol
v042211.1
replicate
1,2
softwareversion
MACS
treatment description
No special treatment or protocol applies
treatment
None

Sequenced DNA Library

library_name
GSM1010729: HudsonAlpha_ChipSeq_GM12878_MTA3_(SC-81325)_v042211.1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
96496538
Reads aligned (%)
80.1
Duplicates removed (%)
5.6
Number of peaks
34860 (qval < 1E-05)

hg38

Number of total reads
96496538
Reads aligned (%)
81.3
Duplicates removed (%)
6.4
Number of peaks
34155 (qval < 1E-05)

Base call quality data from DBCLS SRA