Antigen

Antigen Class

TFs and others

Antigen

JUND

Cell type

Cell type Class

Breast

Cell type

T-47D

Primary Tissue

Breast

Tissue Diagnosis

Adenocarcinoma Ductal

Sample

GEO Accession

GSM1010718

antibody antibodydescription

rabbit polyclonal IgG. Antibody Target: JunD

antibody targetdescription

The protein encoded by this intronless gene is a member of the JUN family, and a functional component of the AP1 transcription factor complex. It has been proposed to protect cells from p53-dependent senescence and apoptosis. Alternate translation initiation site usage results in the production of different isoforms. (provided by RefSeq)

antibody vendorid

sc-74

antibody vendorname

Santa Cruz Biotechnology

antibody

JunD

cell description

epithelial cell line derived from a mammary ductal carcinoma.

cell karyotype

cancer

cell organism

human

cell sex

F

cell

T-47D

controlid

SL13294

datatype description

Chromatin IP Sequencing

datatype

ChipSeq

lab description

Myers - Hudson Alpha Institute for Biotechnology

lab

HudsonAlpha

labexpid

SL11657,SL11656

protocol description

Faster ChIP protocol & AMpure XP size selection for ChIP-seq (Myers)

protocol

v042211.1

replicate

1,2

softwareversion

MACS

treatment description

No special treatment or protocol applies

treatment

None

Sequenced DNA Library

library_name

GSM1010718: HudsonAlpha_ChipSeq_T-47D_JunD_v042211.1

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

57044568

Reads aligned (%)

96.4

Duplicates removed (%)

4.6

Number of peaks

10650 (qval < 1E-05)

hg19

Number of total reads

57044568

Reads aligned (%)

95.7

Duplicates removed (%)

6.0

Number of peaks

10631 (qval < 1E-05)