Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Cardiovascular
Cell type
HBMEC
Tissue
blood vessel
Lineage
mesoderm
Description
brain microvascular endothelial cells

Attributes by original data submitter

Sample

source_name
HBMEC
biomaterial_provider
ScienCell
lab
UW
lab description
Stamatoyannopoulous - University of Washington
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
HBMEC
cell organism
human
cell description
brain microvascular endothelial cells
cell karyotype
normal
cell lineage
mesoderm
cell sex
U
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH000940
labexpid
DS15913
labversion
Bowtie 0.12.7
replicate
1

Sequenced DNA Library

library_name
GSM945311: UW_ChipSeq_HBMEC_Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
25025690
Reads aligned (%)
98.8
Duplicates removed (%)
1.6
Number of peaks
617 (qval < 1E-05)

hg19

Number of total reads
25025690
Reads aligned (%)
97.6
Duplicates removed (%)
2.7
Number of peaks
941 (qval < 1E-05)

Base call quality data from DBCLS SRA