SRX190076
GSM945293: UW ChipSeq HMF Input

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
HMF
Tissue
mammary
Description
mammary fibroblasts

Attributes by original data submitter

Sample

source_name
HMF
biomaterial_provider
ScienCell
lab
UW
lab description
Stamatoyannopoulous - University of Washington
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
HMF
cell organism
human
cell description
mammary fibroblasts
cell sex
F
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH000956
labexpid
DS16174
labversion
Bowtie 0.12.7
replicate
1

Sequenced DNA Library

library_name
GSM945293: UW_ChipSeq_HMF_Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
11577599
Reads aligned (%)
85.8
Duplicates removed (%)
1.0
Number of peaks
392 (qval < 1E-05)

hg19

Number of total reads
11577599
Reads aligned (%)
84.5
Duplicates removed (%)
1.8
Number of peaks
558 (qval < 1E-05)

Base call quality data from DBCLS SRA