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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K4me3
wikigenes
PDBj
CellType: HPAF
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX190075
GSM945292: UW ChipSeq HPAF H3K4me3
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K4me3
Cell type
Cell type Class
Cardiovascular
Cell type
HPAF
Tissue
blood vessel
Lineage
mesoderm
Description
pulmonary artery fibroblasts
Attributes by original data submitter
Sample
source_name
HPAF
biomaterial_provider
ScienCell
lab
UW
lab description
Stamatoyannopoulous - University of Washington
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
HPAF
cell organism
human
cell description
pulmonary artery fibroblasts
cell karyotype
normal
cell lineage
mesoderm
cell sex
U
antibody
H3K4me3
antibody antibodydescription
rabbit polyclonal. Antibody Target: H3K4me3
antibody targetdescription
Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.
antibody vendorname
Millipore
antibody vendorid
07-473
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH000958
labexpid
DS16153
labversion
Bowtie 0.12.7
replicate
1
Sequenced DNA Library
library_name
GSM945292: UW_ChipSeq_HPAF_H3K4me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
57157001
Reads aligned (%)
98.5
Duplicates removed (%)
34.8
Number of peaks
34779 (qval < 1E-05)
hg19
Number of total reads
57157001
Reads aligned (%)
98.2
Duplicates removed (%)
35.1
Number of peaks
35951 (qval < 1E-05)
Base call quality data from
DBCLS SRA