Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Cardiovascular
Cell type
HPAF
Tissue
blood vessel
Lineage
mesoderm
Description
pulmonary artery fibroblasts

Attributes by original data submitter

Sample

source_name
HPAF
biomaterial_provider
ScienCell
lab
UW
lab description
Stamatoyannopoulous - University of Washington
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
HPAF
cell organism
human
cell description
pulmonary artery fibroblasts
cell karyotype
normal
cell lineage
mesoderm
cell sex
U
antibody
H3K4me3
antibody antibodydescription
rabbit polyclonal. Antibody Target: H3K4me3
antibody targetdescription
Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.
antibody vendorname
Millipore
antibody vendorid
07-473
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH000958
labexpid
DS16153
labversion
Bowtie 0.12.7
replicate
1

Sequenced DNA Library

library_name
GSM945292: UW_ChipSeq_HPAF_H3K4me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
57157001
Reads aligned (%)
98.5
Duplicates removed (%)
34.8
Number of peaks
34779 (qval < 1E-05)

hg19

Number of total reads
57157001
Reads aligned (%)
98.2
Duplicates removed (%)
35.1
Number of peaks
35951 (qval < 1E-05)

Base call quality data from DBCLS SRA