SRX190068
GSM945285: UW ChipSeq HPAF Input

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Cardiovascular
Cell type
HPAF
Tissue
blood vessel
Lineage
mesoderm
Description
pulmonary artery fibroblasts

Attributes by original data submitter

Sample

source_name
HPAF
biomaterial_provider
ScienCell
lab
UW
lab description
Stamatoyannopoulous - University of Washington
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
HPAF
cell organism
human
cell description
pulmonary artery fibroblasts
cell karyotype
normal
cell lineage
mesoderm
cell sex
U
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH000958
labexpid
DS16177
labversion
Bowtie 0.12.7
replicate
1

Sequenced DNA Library

library_name
GSM945285: UW_ChipSeq_HPAF_Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
25222604
Reads aligned (%)
95.9
Duplicates removed (%)
1.6
Number of peaks
749 (qval < 1E-05)

hg19

Number of total reads
25222604
Reads aligned (%)
94.7
Duplicates removed (%)
3.0
Number of peaks
978 (qval < 1E-05)

Base call quality data from DBCLS SRA