Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
Jurkat
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Lymphocytic

Attributes by original data submitter

Sample

source_name
Jurkat
biomaterial_provider
ATCC
lab
UW
lab description
Stamatoyannopoulous - University of Washington
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
Jurkat
cell organism
human
cell description
T lymphoblastoid derived from an acute T cell leukemia, "The Jurkat cell line was established from the peripheral blood of a 14 year old boy by Schneider et al., and was originally designated JM." - ATCC. (PMID: 68013)
cell karyotype
cancer
cell lineage
mesoderm
cell sex
M
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH000966
labexpid
DS16193
labversion
Bowtie 0.12.7
replicate
1

Sequenced DNA Library

library_name
GSM945268: UW_ChipSeq_Jurkat_Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
22852691
Reads aligned (%)
97.4
Duplicates removed (%)
1.9
Number of peaks
836 (qval < 1E-05)

hg19

Number of total reads
22852691
Reads aligned (%)
96.3
Duplicates removed (%)
3.7
Number of peaks
995 (qval < 1E-05)

Base call quality data from DBCLS SRA