Antigen

Antigen Class

Histone

Antigen

H3K4me3

Cell type

Cell type Class

Pancreas

Cell type

PANC-1

Tissue

Pancreas/Duct

Disease

Epithelioid Carcinoma

Sample

source_name

PANC-1

biomaterial_provider

ATCC

lab

UW

lab description

Stamatoyannopoulous - University of Washington

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

PANC-1

cell organism

human

cell description

pancreatic carcinoma, (PMID: 1140870) PANC-1 was established from a pancreatic carcinoma, which was extracted via pancreatico-duodenectomy specimen from a 56-year-old Caucasian individual. Malignancy of this cell line was verified via in vitro and in vivo assays.

cell karyotype

cancer

cell lineage

endoderm

cell sex

M

antibody

H3K4me3

antibody antibodydescription

rabbit polyclonal. Antibody Target: H3K4me3

antibody targetdescription

Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.

antibody vendorname

Millipore

antibody vendorid

07-473

treatment

None

treatment description

No special treatment or protocol applies

control

std

control description

Standard input signal for most experiments.

controlid

wgEncodeEH001900

labexpid

DS18335

labversion

Bowtie 0.12.7

replicate

1

Sequenced DNA Library

library_name

GSM945261: UW_ChipSeq_PANC-1_H3K4me3

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

44201831

Reads aligned (%)

98.9

Duplicates removed (%)

18.8

Number of peaks

38165 (qval < 1E-05)

hg19

Number of total reads

44201831

Reads aligned (%)

98.5

Duplicates removed (%)

19.5

Number of peaks

38650 (qval < 1E-05)