SRX190040
GSM945257: UW ChipSeq HRE Input

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Kidney
Cell type
HRE
Tissue
epithelium
Lineage
mesoderm
Description
renal epithelial cells

Attributes by original data submitter

Sample

source_name
HRE
biomaterial_provider
Lonza
lab
UW
lab description
Stamatoyannopoulous - University of Washington
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
HRE
cell organism
human
cell description
renal epithelial cells
cell karyotype
normal
cell lineage
mesoderm
cell sex
U
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH000467
labexpid
DS11549
labversion
Bowtie 0.12.5
replicate
1

Sequenced DNA Library

library_name
GSM945257: UW_ChipSeq_HRE_Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
18686259
Reads aligned (%)
97.6
Duplicates removed (%)
1.7
Number of peaks
413 (qval < 1E-05)

hg19

Number of total reads
18686259
Reads aligned (%)
96.8
Duplicates removed (%)
2.8
Number of peaks
688 (qval < 1E-05)

Base call quality data from DBCLS SRA