ChIP-Atlas: SRX190039

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: Input control
Antigen: Input control

Cell type

Cell type Class: Kidney
Cell type: 293
Primary Tissue: Kidney
Tissue Diagnosis: Normal

Attributes by original data submitter

Sample

source_name: HEK293
biomaterial_provider: ATCC
lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: HEK293
cell organism: human
cell description: embryonic kidney, cells contain Adenovirus 5 DNA (PMID: 11967234)
cell karyotype: normal
cell lineage: mesoderm
cell sex: U
antibody: Input
antibody description: Control signal which may be subtracted from experimental raw signal before peaks are called.
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH000464
labexpid: DS13603
labversion: Bowtie 0.12.5
replicate: 1

Sequenced DNA Library

library_name: GSM945256: UW_ChipSeq_HEK293_Input
library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP

Sequencing Platform

instrument_model: Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads: 17560427
Reads aligned (%): 90.6
Duplicates removed (%): 2.1
Number of peaks: 430 (qval < 1E-05)

hg19

Number of total reads: 17560427
Reads aligned (%): 89.9
Duplicates removed (%): 3.5
Number of peaks: 705 (qval < 1E-05)

Base call quality data from DBCLS SRA