Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Cardiovascular
Cell type
HUVEC
Primary Tissue
Umbilical Cord
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
HUVEC
biomaterial_provider
Lonza
lab
UW
lab description
Stamatoyannopoulous - University of Washington
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
HUVEC
cell organism
human
cell description
umbilical vein endothelial cells
cell karyotype
normal
cell lineage
mesoderm
cell sex
U
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH000468
labexpid
DS11470
labversion
Bowtie 0.12.5
replicate
1

Sequenced DNA Library

library_name
GSM945254: UW_ChipSeq_HUVEC_Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
17835876
Reads aligned (%)
97.1
Duplicates removed (%)
2.4
Number of peaks
507 (qval < 1E-05)

hg19

Number of total reads
17835876
Reads aligned (%)
96.3
Duplicates removed (%)
3.7
Number of peaks
832 (qval < 1E-05)

Base call quality data from DBCLS SRA