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For hg38
BigWig
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BigWig
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Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: NHDF-neo
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX190033
GSM945250: UW ChipSeq NHDF-neo Input
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Epidermis
Cell type
NHDF-neo
Tissue
skin
Lineage
mesoderm
Description
neonatal dermal fibroblasts
Attributes by original data submitter
Sample
source_name
NHDF-neo
biomaterial_provider
Lonza
lab
UW
lab description
Stamatoyannopoulous - University of Washington
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
NHDF-neo
cell organism
human
cell description
neonatal dermal fibroblasts
cell karyotype
normal
cell lineage
mesoderm
cell sex
U
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH000972
labexpid
DS16203
labversion
Bowtie 0.12.7
replicate
1
Sequenced DNA Library
library_name
GSM945250: UW_ChipSeq_NHDF-neo_Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
33874487
Reads aligned (%)
98.8
Duplicates removed (%)
2.0
Number of peaks
962 (qval < 1E-05)
hg19
Number of total reads
33874487
Reads aligned (%)
97.7
Duplicates removed (%)
3.5
Number of peaks
1191 (qval < 1E-05)
Base call quality data from
DBCLS SRA